Computational Systems Biology
Sauro Lab
University of Washington
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Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
 
maintained by Frank Bergmann
 
 
 
 

SBW AutoLayout API

Service: network

This service allows to layout the network.

void toggleVisibility()

Toggles the visibility of the Form

void setVisible(boolean)

hides/shows the form

string getCurrentSBML()

Returns the model as it is currently Loaded.

string getSBML()

Layouts the currently loaded SBML model and returns the model with Layout information

string generateLayout(double,double,boolean)

Generates a layout with the given settings of gravity, stiffness and magnetism.

string generateLayout(double,double,boolean,boolean,boolean)

Generates a layout with the given settings of gravity, stiffness, magnetism mode, boundary mode, grid mode.

string convertLayout(string)

Reads in a file with SBML Layout and converts reactions to a more friendly format

void loadSBML(string)

Loads an SBML file (level 1 or level 2) in order to generate a layout

void doAnalysis(string)

Loads an SBML file (level 1 or level 2) in order to generate a layout

 
sbw/autolayout/apiguide.txt · Last modified: 2007/01/12 08:13 (external edit)
 

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