Computational Systems Biology
Sauro Lab
University of Washington
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Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
 
maintained by Frank Bergmann
 
 
 
 

SBML Layout Support

The SBML Layout Support module supports reading and modifying existing layout information in SBML or adding layout information to SBML. It uses the SBML Layout Extension (Gauges et al.,2006) for storing layout information, and can read layout information from JDesigner and CellDesigner formats.

:sbw:sbmllayout:layoutsupport_main_600w.jpg

There is also a SBML Layout Viewer, which renders the model according to it's layout information.

:sbw:sbmllayout:layoutsupportgui_main_600w.jpg

Installation

The SBML Layout Support module is installed with SBW. For more information see the SBW installation page.

The SBML Layout Support module is fully supported on Windows, Mac OS X, and Linux.

Documents & Help

Papers

Deckard A, Bergmann FT, Sauro HM. Supporting the SBML layout extension. Bioinformatics. 2006 Oct 11;

 
sbw/sbmllayout.txt · Last modified: 2007/01/11 23:33 (external edit)
 

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