Computational Systems Biology
Sauro Lab
University of Washington
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Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
5. Matlab Interface
6. Optimization
6. Bifurcation
maintained by Frank Bergmann

Software Libraries

Software Libraries by the Sauro Lab

Here we list software libraries written by our lab.


Antimony is a SBML compatible, human-readable, human-writable, model definition language. For detailed documentation, source code and binaries please see the sourceforge site at:

or continue reading here:


Structural Analysis Library (libStructural)

The structural analysis library is a C/C++ portable software library for analyzing the structural properties of stoichiometric networks. The library supports the analysis of both flux balance and moiety conservation. The library will accept models in the form of either standard SBML or raw stoichiometry matrices. The software is distributed under the BSD license and was developed through funding from NIH grant 1R01GM081070-01.

More information.

Third-Party Software Libraries


libSBML is THE standard library for reading and writing SBML. The library is used by many applications including SBW and libStructural.


SOSLib is is both a programming library and a command-line application for the numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction network encoded in the Systems Biology Markup Language (SBML). It is written in ANSI/ISO C and distributed under the terms of the GNU Lesser General Public License (LGPL).

sysbio/softwarelibraries.txt · Last modified: 2009/04/30 11:19 by fbergman

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