Computational Systems Biology
Sauro Lab
University of Washington
Home  |   Downloads  |   News  |   Research  |   Papers  |   About Us  |   Contact Us  |   SBW Help   |   Jobs
     


What is SBW 
Research Impact 
Published Papers 
Lab Members 
Available Positions 
CSB Links 
Courses 
Student Projects 
 
 
 
Software Downloads:

1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
 
maintained by Frank Bergmann
 
 
 
 

Software Libraries

Software Libraries by the Sauro Lab

Here we list software libraries written by our lab.

Antimony

Antimony is a SBML compatible, human-readable, human-writable, model definition language. For detailed documentation, source code and binaries please see the sourceforge site at:

http://antimony.sourceforge.net/

or continue reading here:

Antimony

Structural Analysis Library (libStructural)

The structural analysis library is a C/C++ portable software library for analyzing the structural properties of stoichiometric networks. The library supports the analysis of both flux balance and moiety conservation. The library will accept models in the form of either standard SBML or raw stoichiometry matrices. The software is distributed under the BSD license and was developed through funding from NIH grant 1R01GM081070-01.

More information.

Third-Party Software Libraries

libSBML

libSBML is THE standard library for reading and writing SBML. The library is used by many applications including SBW and libStructural.

SOSLib

SOSLib is is both a programming library and a command-line application for the numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction network encoded in the Systems Biology Markup Language (SBML). It is written in ANSI/ISO C and distributed under the terms of the GNU Lesser General Public License (LGPL).

 
sysbio/softwarelibraries.txt · Last modified: 2009/04/30 11:19 by fbergman
 

    Home  |   About Us  |   Contact Us  |   Statistics
Recent changes RSS feed Creative Commons License Donate Powered by PHP Valid XHTML 1.0 Valid CSS Driven by DokuWiki